The School founded in March 1857, was named after Sir Jamsetjee Jeejebhoy, a businessman and philanthropist who donated Rs. 100,000 for its endowment. Operations were managed by a committee headed by the Chief Justice of Bombay. The School's first class was in drawing, and began on 2 March 1857. Classes were held at the Elphinstone Institution. John Griffiths became Principal of the School in 1865. He later became famous for copying the murals in the Ajanta Caves temple complex, a project which lasted from 1872 to 1891, and which the School's students assisted in. In 1866, management of the school was taken over by the Government of India. Also in 1866, Lockwood Kipling, who had become a professor of the School in 1865, established three for Decorative Paintings, Modelling; and Ornamental Wrought Iron Work, and became its first dean. He was the father of the author Rudyard Kipling, who was born on the School's campus. In 1878, the school moved to its own building, where it is currently situated. The building was designed by architect George Twigge Molecey, in neo Gothicarchitecture. The School campus, including the Kipling House, better known as the Dean's Bungalow, is classified as Grade II heritage structure by the Government of Maharashtra, and underwent a restoration in 2002-2006, and again in 2008. Drawing instruction as a subject was introduced in 1879 and a programme for training drawing teachers was started in 1893. In 1891 the Lord Reay Art Workshops were established.
1900s
The School had an important tradition in architecture. In 1900. the School offered its first course in architecture, taught by John Begg, later Consulting Architect of Bombay and of the Government of India. A complete 4-year programme was established in 1908 under Begg's assistant George Wittet. In 1917, architect Claude Batley became a visiting professor; he was Principal of the School from 1923 to 1943, and is commemorated in the Claude Batley Architectural Gallery for architectural exhibitions, opened in 1996. In 1896, the Draughtsman's classes, the nucleus of the Department of Architecture, were added. This Department was later organised for a 3 years Diploma Course which was duly recognised by the R.I.B.A. Board. In 1910, the Sir George Clarke Studies and Laboratories were built for the advanced study of crafts, pottery being the first craft taken up for study. In 1929, the head of the School was renamed "Director", and in 1935, the Department of Commercial Art was also started. In 1937 M.R. Acharekar was appointed deputy director and continued his tenure till 1939. Shri. V. S. Adurkar was the first Indian head of the school, succeeding Claude Batley as Director in 1943.
Post-independence
In 1958, the school was divided, with the Departments of Architecture and Applied Art becoming the Sir J. J. College of Architecture and Sir J.J. Institute of Applied Art respectively. In 1981, the School became affiliated with the University of Mumbai.