SV Werder Bremen Amateure first entered the highest league in the state of Bremen, then the tier two Amateurliga Bremen, in 1956, winning a league title in its first season there. The team played as a top side in this league, winning another title in 1962. With the introduction of the Bundesliga in 1963 and the Regionalliga below the Amateurliga Bremen slipped to third tier and Werder Amateure continued to play as a strong side at this level. A runners-up finish in 1966 qualified the team for the German amateur football championship where it defeated Hannover 96 Amateure to win the first of three titles in this competition. It won two more league titles in the Amateurliga in 1967 and 1968 but was knocked out early in the German amateur championship. The team continued as a top side in the league but came only eighth in 1973–74 when a top two finish was required to qualify for the Oberliga Nord, the new third tier in Northern Germany. From 1974 onwards, until 2008, it was also possible for the team to qualify for the German Cup through Bremen Cup wins and it did so on nineteen occasions from 1976 to 2008. Werder Amateure won what was now the tier four Verbandsliga Bremen and earned promotion to the Oberliga in 1976, beginning an era of third division play that would last until 2012. The team played four average Oberliga Nord seasons before becoming one of the most successful teams in the league, winning championships in 1982 and 1984, and finishing runners-up in 1981, 1983 and 1992 but, as a reserve side, not being permitted to take part in the promotion round to the 2. Bundesliga. Through this success the team became a regular in the German amateur championship, winning titles in 1985 and 1991 and making losing appearances in the 1982 and 1993 finals. In 1994 when the Regionalliga Nord was established in the region as the new third tier Werder Amateure was one of the team's qualified. The team was not quite as successful in the new Regionalliga in the era from 1994 to 2008 as it had been in the Oberliga, a third place in 1997 being its best-ever result. It did however achieve its two best DFB-Pokal runs in this time, reaching the third round in 1999–2000 and 2007–08, on both occasions going out to VfB Stuttgart. In 2008 the team was one of three reserve sides to qualify for the new 3. Liga, the new third tier of German league football. Werder Bremen II played four seasons at this level, never finishing higher than thirteenth and was relegated from the league in 2012, after 37 seasons at the third tier of German football. The team entered the Regionalliga Nord again, now at the fourth tier and finished runners-up in the league in 2013–14, followed by a league championship the season after. The latter allowed the club to participate in the promotion round to the 3. Liga where it defeated Borussia Mönchengladbach II 2–0 away after a nil-all draw at home and earned promotion back to the third tier.
The recent season-by-season performance of the club:
Year
Division
Tier
Position
1999–2000
Regionalliga Nord
III
5th
2000–01
Regionalliga Nord
III
15th
2001–02
Regionalliga Nord
III
10th
2002–03
Regionalliga Nord
III
6th
2003–04
Regionalliga Nord
III
5th
2004–05
Regionalliga Nord
III
14th
2005–06
Regionalliga Nord
III
12th
2006–07
Regionalliga Nord
III
8th
2007–08
Regionalliga Nord
III
5th
2008–09
3. Liga
III
17th
2009–10
3. Liga
III
13th
2010–11
3. Liga
III
18th
2011–12
3. Liga
III
20th↓
2012–13
Regionalliga Nord
IV
5th
2013–14
Regionalliga Nord
IV
2nd
2014–15
Regionalliga Nord
IV
1st ↑
2015–16
3. Liga
III
17th
2016–17
3. Liga
III
17th
2017–18
3. Liga
III
18th↓
2018–19
Regionalliga Nord
IV
3rd
2019–20
Regionalliga Nord
IV
With the introduction of the Regionalligas in 1994 and the 3. Liga in 2008 as the new third tier, below the 2. Bundesliga, all leagues below dropped one tier.