In 1996, Nur Misuari signed a peace agreement with the Philippine government that led to the creation of the Autonomous Region in Muslim Mindanao ; Misuari eventually became its first governor. In April 2000, Misuari was ousted as MNLF chair by his colleagues, who cited his incompetent performance as ARMM governor. He was replaced by the "Committee of Fifteen", which is the central leadership of the MNLF. Then-President Gloria Macapagal Arroyo also cited Php 43 billion worth of funds for the ARMM that remained unaccounted for. Arroyo then chose Dr. Parouk Hussin, a member of the "Committee of Fifteen", as the administration's candidate as ARMM governor. Hussin eventually won the post and stated that he would focus on an audit of the region's fiscal and property resources. Apparently offended by his ouster from the MNLF leadership, as well as losing the ARMM governor's post and facing a fiscal audit for missing public funds, Misuari declared war on the Arroyo government on 19 November 2001.
The rebellion
The Philippine government stated that Misuari then launched an armed rebellion on the island of Jolo to undermine elections for his position as ARMM governor. MNLF members loyal to Misuari began attacking Philippine Army outposts; the hostilities caused a hundred fatalities, most of whom were Misuari's men. Many were wounded, including civilians. In Zamboanga City, 300 MNLF men led by Julhambri Misuari, Nur Misuari's nephew, took over the Cabatangan government complex and held the residents of the neighborhood hostage, marching them around the city roped together, until they were allowed to leave unmolested by government forces which had ringed the city outskirts.
Aftermath
The Philippine government filed rebellion charges against Nur Misuari in a Sulu court. Misuari initially escaped the militarydragnet; there were reports that he had sought refuge in Sabah, Malaysia. Other reports stated that the Abu Sayyaf was hiding him in Jolo. Misuari was captured by Royal Malaysia Police forces a few days after the fighting and extradited back to the Philippines. He was charged with rebellion but was eventually released. In 2008, the rebellion charges against him were dropped. Five years later, an armed incursion into Zamboanga City by forces loyal to Nur Misuari led to the 2013 Zamboanga City crisis.
